PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03872.1.p
Common NameEUGRSUZ_H03872
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 319aa    MW: 34963.8 Da    PI: 5.8272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03872.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.6e-095984227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      + + C +++rtG+C yG+ C+++H++
  Eucgr.H03872.1.p 59 GVADCLHYLRTGYCGYGAGCRYNHPR 84
                      7899********************96 PP

2zf-CCCH37.83.3e-12181206227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C +++rtG+C yG+rC+F+H++
  Eucgr.H03872.1.p 181 DEADCVYYLRTGYCGYGARCRFNHPR 206
                       6789********************96 PP

3zf-CCCH29.71.1e-09233256427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       + C +++rtG C yG+ C+F+H++
  Eucgr.H03872.1.p 233 ADCIYYLRTGNCGYGAGCRFNHPR 256
                       68********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2355785IPR000571Zinc finger, CCCH-type
SMARTSM003560.00155784IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-65984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-66186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-46384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22179207IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5179206IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9181206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-6182207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-6185206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216229257IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-4229256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6230258IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7233256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5235256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNGYAGAHEG SGSDSSPERR DDSGADTGLE APMWQLGLGR DGGGGGGGES GPAYPERPGV  60
ADCLHYLRTG YCGYGAGCRY NHPRDRSTVV GVTRAGGAEY PERAGQPTHR LGLLERRLLF  120
VRPPVRTMNG YPGAQEGPRL NPLPEWPDDP RAETGLEEPM WQLGWGRGGG ESDPAYPERP  180
DEADCVYYLR TGYCGYGARC RFNHPRDRSA LGLGSGSGGG EPDLAYPERP EAADCIYYLR  240
TGNCGYGAGC RFNHPRDRST VTLSDLLFFF YRHLFSFWFW FLAFRCDHLA SWSHFGGDLV  300
VFVTVVLRLD LLAILDYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03872.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024644.11e-157PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_010024645.11e-157PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_010024646.11e-157PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A059B5C30.0A0A059B5C3_EUCGR; Uncharacterized protein
STRINGGLYMA15G10230.14e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2579233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.16e-29C3H family protein